| author | = | {W. Scholz and S. Batra}, | |
| title | = | "Micromagnetic Simulation of Head Field and Write Bubble Dynamics in Perpendicular Recording", | |
| journal | = | {IEEE Trans. Magn.}, | |
| note | = | {submitted}, | |
| year | = | 2005 |
| author | = | {W. Scholz and S. Batra}, | |
| title | = | "Micromagnetic Modeling of Head Field Rise Time for High Data-Rate Recording", | |
| journal | = | {IEEE Trans. Magn.}, | |
| volume | = | 41, | |
| year | = | 2005, | |
| pages | = | {702-706} |
| author | = | {M. d'Aquino and W. Scholz and T. Schrefl and C. Serpico and J. Fidler}, | |
| title | = | "Micromagnetic Analysis of Fast Precessional Switching", | |
| journal | = | {J. Magn. Magn. Mater.}, | |
| volume | = | {290-291}, | |
| year | = | 2005, | |
| pages | = | {510-513} |
| author | = | {M. d'Aquino and W. Scholz and T. Schrefl and C. Serpico and J. Fidler}, | |
| title | = | "Numerical and analytical study of fast precessional switching", | |
| journal | = | {J. Appl. Phys.}, | |
| volume | = | 95, | |
| year | = | 2004, | |
| pages | = | {7055-7057} |
| author | = | {E. M. Garzon and S. Tabik and I. Garcia and A. R. Bretones}, | |
| title | = | "Multiprocessing of the Time Domain Analysis of Thin-Wire Antennas and Scatterers", | |
| booktitle | = | {12th Euromicro Conference on Parallel, Distributed and Network-Based Processing (PDP'04)}, | |
| year | = | 2004, | |
| pages | = | {80--} |
| author | = | {M. d'Aquino and W. Scholz and T. Schrefl and C. Serpico and G. Miano}, | |
| title | = | "Analysis of fast precessional switching in magnetic thin films", | |
| booktitle | = | {Proceedings of PIERS (Progress In Electromagnetic Research Symposium)}, | |
| year | = | 2004, | |
| pages | = | {257-260} |
| author | = | {W. Scholz and J. Fidler and T. Schrefl and D. Suess and H. Forster and R. Dittrich and V. Tsiantos}, | |
| title | = | "Numerical Micromagnetic Simulation of Fe-Pt Nanoparticles with Multiple Easy Axes", | |
| journal | = | {J. Magn. Magn. Mater.}, | |
| year | = | 2004, | |
| pages | = | {1524-1525} |
| author | = | {Richard Boardman and Juergen Zimmermann and Hans Fangohr and Alexander Zhukov and Peter de Groot}, | |
| title | = | "Micromagnetic simulation studies of ferromagnetic part-spheres", | |
| journal | = | {Journal of Applied Physics}, | |
| year | = | 2005 |
| author | = | {C. K. Lim and Y. S. Kim and N. Y. Park and J. Lee}, | |
| title | = | "High Density Magnetic Random Access Memory Using a Pair of Asymmetrical Cell", | |
| journal | = | {IEEE Trans. Magn.}, | |
| note | = | {submitted} |
| author | = | {W. Scholz and D. Suess and T. Schrefl and and J. Fidler}, | |
| title | = | "Micromagnetic simulation of magnetization reversal in small particles with surface anisotropy", | |
| journal | = | {J. Appl. Phys.}, | |
| volume | = | 95, | |
| year | = | 2004, | |
| pages | = | {6807-6809} |
| author | = | {W. Scholz and T. Schrefl and J. Fidler and T. Matthias and D. Suess and V. Tsiantos}, | |
| title | = | "Micromagnetic simulation of the pinning and depinning process in permanent magnets", | |
| journal | = | {IEEE Trans. Magn.}, | |
| volume | = | 39, | |
| year | = | 2003, | |
| pages | = | {2920-2922} |
| author | = | {W. Scholz and K. Y. Guslienko and V. Novosad and D. Suess and T. Schrefl and R. W. Chantrell and J. Fidler}, | |
| title | = | "Transition from single-domain to vortex state in soft magnetic cylindrical nanodots", | |
| journal | = | {J. Magn. Magn. Mater.}, | |
| volume | = | 266, | |
| year | = | 2003, | |
| pages | = | {155-163} |
| author | = | { W. Scholz and J. Fidler and T. Schrefl and D. Suess and R. Dittrich and H. Forster and V. Tsiantos}, | |
| title | = | "Scalable Parallel Micromagnetic Solvers for Magnetic Nanostructures", | |
| journal | = | "Comp. Mat. Sci", | |
| year | = | 2003, | |
| pages | = | "366--383", | |
| volume | = | 28, | |
| url | = | {http://magnet.atp.tuwien.ac.at/scholz/projects/papers/preprint/scholz/cms03/magpar.pdf} |
| author | = | {W. Scholz}, | |
| title | = | "Scalable Parallel Micromagnetic Solvers for Magnetic Nanostructures", | |
| school | = | {Vienna University of Technology, Vienna, Austria}, | |
| year | = | 2003 |
| author | = | {W. Scholz and D. Suess and R. Dittrich and T. Schrefl and V. Tsiantos and H. Forster and J. Fidler}, | |
| title | = | "Implementation of a high performance parallel finite element micromagnetics package", | |
| journal | = | {J. Magn. Magn. Mater.}, | |
| year | = | 2004, | |
| url | = | {http://magnet.atp.tuwien.ac.at/scholz/projects/papers/preprint/scholz/icm2003/scholz_petsc.pdf} |
| AUTHOR | = | "W. Zhang and I. Gladwell", | |
| chapter | = | "Performance of MOL for Surface Motion Driven by a Laplacian of Curvature", | |
| editor | = | "Z. Chen and R.E. Ewing and Z.-C. Shi", | |
| YEAR | = | "2000", | |
| TITLE | = | "Numerical Treatment of Multiphase Flows in Porous Media, Lecture Notes in Physics, vol. 552", | |
| publisher | = | "Springer", | |
| pages | = | "4190-" |
| author | = | "A. J. Haslan and D. Moldovan and S. R. Phillpot and V. Yamakov", | |
| title | = | "Combined Atomistic and Mesoscale simulation of grain growth in nanocrystalline thin films", | |
| journal | = | "Phil. Mag. A", | |
| year | = | "2003", | |
| Lab | = | {ANL} |
| author | = | "A. J. Haslan and D. Moldovan and S. R. Phillpot and H. Gleiter", | |
| title | = | "Mesoscopic simulation of two dimensional grain growth with anisotropic grain-boundary properties", | |
| journal | = | "Computational Materials Science", | |
| year | = | "2001", | |
| volume | = | "23", | |
| pages | = | "15--32", | |
| Lab | = | {ANL} |
| author | = | "D. Moldovan and S. R. Phillpot and A. J. Haslan", | |
| title | = | "Role of grain rotation in grain growth by mesoscale simulation", | |
| journal | = | "Phil. Mag. A", | |
| year | = | "2002", | |
| volume | = | "82", | |
| pages | = | "1271--1297", | |
| Lab | = | {ANL} |
| author | = | { Olivier Saut}, | |
| title | = | "Bidimensional Study of the Maxwell-Bloch Model in a Nonlinear Crystal", | |
| journal | = | "SIAM Journal on Scientific Computing", | |
| year | = | 2004, | |
| note | = | "submitted", | |
| url | = | {http://mip.ups-tlse.fr/\~{ }saut/data/sisc04.pdf} |
| author | = | {Y. Ataseven and Z. Akal\iota n-Acar and C.~E. Acar and N. G. Gen\c{c}er}, | |
| title | = | {Parallel implementation of the accelerated BEM approach for EMSI of the human brain}, | |
| journal | = | {Medical and Biological Engineering and Computing}, | |
| month | = | {February}, | |
| year | = | {2008}, | |
| note | = | {doi 10.1007/s11517-008-0316-0} |
| author | = | {B. H. Dennis and R. C. Eberhart and G. S. Dulikravich and S.W. Radons}, | |
| pages | = | "832-840", | |
| volume | = | 125, | |
| number | = | 6, | |
| title | = | "Finite-element simulation of cooling of realistic 3-D human head and neck", | |
| journal | = | "J Biomech Eng", | |
| year | = | 2003, | |
| url | = | {http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=14986408&dopt=Citation} |
| author | = | {V. C. Motrescu and U. van Rienen}, | |
| pages | = | "227--231", | |
| volume | = | 3, | |
| title | = | "Computation of currents induced by ELF electric fields in anisotropic human tissues using the Finite Integration Technique", | |
| journal | = | "Advances in Radio Science", | |
| year | = | 2005, | |
| url | = | {http://www.copernicus.org/URSI/ars/3/ars-3-227.pdf} |
| author | = | {V. C. Motrescu and U. van Rienen}, | |
| pages | = | "309--313", | |
| volume | = | 2, | |
| title | = | "Computation of electrostatic fields in anisotropic human tissues using the Finite Integration Technique (FIT)", | |
| journal | = | "Advances in Radio Science", | |
| year | = | 2004, | |
| url | = | {http://www.copernicus.org/URSI/ars/ARS_2_1/309.pdf} |
| author | = | "Enzo A. Dari and Mariano I. Cantero and Raul A. Feijoo", | |
| title | = | "Computational arterial flow modeling using a parallel Navier-Stokes solver", | |
| booktitle | = | "ECCOMAS2000", | |
| year | = | "2000", | |
| url | = | "http://146.134.8.133/Feijoo/CModComplexos/Conferencias/ECCOMAS2000/Darie/eccomas.html" |
| title | = | {Parallel Simulation Engines for Whole-Cell Models}, | |
| author | = | {Markus Schwehm and Nils Gehlenborg and Hendrik Post and Amelie Stein and Kirstin Weber}, | |
| note | = | {Poster at Second International Conference on Systems Biology (ICSB) 2001}, | |
| url | = | {http://www.icsb-2001.org/Posters/110_schwehm2.pdf}, | |
| institution | = | {University of Tubingen, ZBIT - Zentrum fur Bioinformatik Tubingen}, | |
| year | = | 2001 |
| author | = | {M. F. Adams and Harun H. Bayraktar and Tony M. Keaveny and Panayiotis Papadopoulos}, | |
| title | = | {Ultrascalable Implicit Finite Element Analyses in Solid Mechanics with over a Half a Billion Degrees of Freedom}, | |
| note | = | {Winner of Gordon Bell Special Prize at SC2004: Large scale trabecular bone finite element modeling}, | |
| booktitle | = | {Proceedings of SC04}, | |
| url | = | {http://www.sc-conference.org/sc2004/schedule/pdfs/pap111.pdf}, | |
| Lab | = | {LBL} |
| author | = | {Adams, M.~F. and Bayraktar, H.H. and Keaveny, T.M. and Papadopoulos, P.}, | |
| title | = | {Applications of Algebraic Multigrid to Large-Scale Finite Element Analysis of Whole Bone Micro-Mechanics on the IBM SP}, | |
| booktitle | = | {ACM/IEEE Proceedings of SC2003: High Performance Networking and Computing}, | |
| year | = | {2003}, | |
| Lab | = | {LBL} |
| author | = | "Volkan Akcelik and George Biros and Omar Ghattas", | |
| title | = | "Parallel Multiscale Gauss-Newton-Krylov Methods For Inverse Wave Propagation", | |
| booktitle | = | "Procceedings of SC2002", | |
| url | = | "http://www-2.cs.cmu.edu/\~{ }oghattas/papers/sc2002.pdf", | |
| note | = | "Winner of SC2002 Best Paper. A parallel algorithm for inverse problems governed by time-dependent PDEs, and scalability results for an inverse wave propagation problem of determining the material field of an acoustic medium. Using the algorithm, they solved a synthetic inverse wave propagation problem though a pelvic bone geometry involving 2.1 million inversion parameters in 3 hours on 256 processors.", | |
| year | = | "2002" |
| author | = | "J. Antaki and G. Belloch and O. Ghattas and I. Malcevic and G. Miller and N. Walkington", | |
| title | = | "A Parallel Dynamic-Mesh Lagrangian Method for Simulation of Flows with Dynamic Interfaces", | |
| booktitle | = | "Procceedings of SC2000", | |
| url | = | "http://www.cs.cmu.edu/\~{ }oghattas/papers/sc2000/sc2000.pdf", | |
| note | = | "Blood flow modeling at the microscale including effects on individual blood cells, for designing heart assist pumps, etc.", | |
| year | = | "2000" |
| author | = | {P. Colli Franzone and L. F. Pavarino and G. Savare}, | |
| editor | = | {A. Quarteroni et al.}, | |
| title | = | {Complex Systems in Biomedicine}, | |
| chapter | = | {Computational Electrocardiology: mathematical and numerical modeling}, | |
| publisher | = | {Springer-Verlag}, | |
| pages | = | {187--241}, | |
| year | = | {2006} |
| author | = | {P. Colli Franzone and L. F. Pavarino and S. Scacchi and B. Taccardi}, | |
| title | = | {Determining recovery times from transmembrane action potentials and unipolar electrograms in normal heart tissue}, | |
| booktitle | = | {FIMH07}, | |
| publisher | = | {Springer-Verlag}, | |
| volume | = | {4466}, | |
| pages | = | {139--149}, | |
| year | = | {2007} |
| AUTHOR | = | "Luca F. Pavarino and Piero Colli Franzone and Bruno Taccardi", | |
| TITLE | = | "Monodomain Simulations of Excitation and Recovery in Cardiac Blocks with Intramural Heterogeneity", | |
| BOOKTITLE | = | "Functional Imaging and modeling of the Heart (FIMH05)", | |
| PAGES | = | "267--277", | |
| EDITORS | = | "A. Frangi et al.", | |
| PUBLISHER | = | "Springer, Lecture Notes in Computer Science (LNCS), v. 3504", | |
| YEAR | = | "2005" |
| author | = | {Boyce Griffith}, | |
| title | = | {Simulating the blood-muscle-valve mechanics of the heart by an adaptive and parallel version of the immersed boundary method}, | |
| school | = | {New York University}, | |
| year | = | 2005 |
| author | = | {Maria S. Murillo}, | |
| title | = | {Parallel Algorithms and Software for Time-Dependent System of Nonlinear Partial Differential Equations with an Application in Computational Biology}, | |
| school | = | {University of Colorado at Boulder}, | |
| year | = | 2002 |
| author | = | "Rodrigo Weber Dos Santos and G. Plank and S. Bauer", | |
| title | = | "Parallel multigrid preconditioner for the cardiac bidomain model", | |
| journal | = | "IEEE Trans. Biomed. Eng", | |
| year | = | "2004", | |
| volume | = | "51", | |
| pages | = | "1960--1968" |
| author | = | "E. J. Vigmond and M. Hughes and G. Plank, L.J. Leon", | |
| title | = | " Computational Tools for Modeling Electrical Activity in Cardiac Tissue", | |
| journal | = | "J. Electrocardiol.", | |
| year | = | "2003", | |
| volume | = | "36", | |
| pages | = | "69--74" |
| AUTHOR | = | "Rodrigo Weber Dos Santos and G. Plank and S. Bauer and and E.J. Vigmond", | |
| TITLE | = | "Preconditioning Techniques for the Bidomain Equations", | |
| BOOKTITLE | = | "Proceedings of the 15th International Conference on Domain Decomposition Methods", | |
| PAGES | = | "571--580", | |
| PUBLISHER | = | "Springer, Lecture Notes in Computational Science and Engineering (LNCSE).", | |
| NOTE | = | "", | |
| URL | = | "http://www.ddm.org/DD15/proceedings-dd15.html", | |
| YEAR | = | "2003" |
| author | = | "P. Colli Franzone and L.~F. Pavarino", | |
| title | = | "A parallel solver for reaction-diffusion systems in computational electrocardiology", | |
| journal | = | "Mathematical Models and Methods in Applied Sciences", | |
| year | = | "2004", | |
| volume | = | "14", | |
| number | = | 6, | |
| pages | = | "883--912" |
| author | = | "P. Colli Franzone and L.~F. Pavarino and B. Taccardi", | |
| title | = | "Simulating patterns of excitation, repolarization and action potential durationwith cardiac Bidomain and Monodomain models", | |
| journal | = | "Mathematical Biosciences", | |
| year | = | "2005", | |
| volume | = | "197", | |
| number | = | 1, | |
| pages | = | "35--66" |
| author | = | "P. Colli Franzone and L.~F. Pavarino and B. Taccardi", | |
| title | = | "Effects of transmural electrical heterogeneities and electrotonic interactions on the dispersion of cardiac repolarization and action potential duration: a simulation study", | |
| journal | = | "Mathematical Biosciences", | |
| year | = | "2006", | |
| volume | = | "204", | |
| number | = | 1, | |
| pages | = | "132--165" |
| AUTHOR | = | "P. Colli-Franzone and L.F. Pavarino and B. Taccardi", | |
| TITLE | = | "MODELING ANISOTROPIC AND HETEROGENEOUS CARDIAC MODELS: PARALLEL SIMULATIONS", | |
| BOOKTITLE | = | "MEDICON and HEALTH TELEMATICS 2004, Health in the Information Society, X Mediterranean Conference on Medical and Biological Engineering", | |
| URL | = | "http://cluster.mat.unimi.it/doc/Progetti/Pavarino-LF.pdf", | |
| YEAR | = | "2004" |
| AUTHOR | = | "Luca F. Pavarino and Piero Colli Franzone", | |
| TITLE | = | "Parallel Solution of Cardiac Reaction-Diffusion Models", | |
| BOOKTITLE | = | "Proceedings of the 15th International Conference on Domain Decomposition Methods", | |
| PAGES | = | "669--776", | |
| PUBLISHER | = | "Springer, Lecture Notes in Computational Science and Engineering (LNCSE).", | |
| NOTE | = | "", | |
| URL | = | "http://www.ddm.org/DD15/proceedings-dd15.html", | |
| YEAR | = | "2003" |
| author | = | "Maria Murillo and Xiao-Chuan Cai", | |
| title | = | "A fully implicit parallel algorithm for simulating the non-linear electrical activity of the heart", | |
| journal | = | "Numerical Linear Algebra with Applications", | |
| year | = | "2004", | |
| volume | = | "11", | |
| pages | = | "261 - 277", | |
| url | = | "http://www3.interscience.wiley.com/cgi-bin/abstract/107632540/ABSTRACT" |
| title | = | "TACC supercomputer performs laser cancer surgery on canine", | |
| url | = | "http://www.tacc.utexas.edu/research/users/features/dynamic.php?m_b_c=laser", | |
| note | = | {In April, the Lonestar supercomputer at the Texas Advanced Computing Center in Austin performed laser surgery on a dog in Houston without the intervention of a surgeon. The treatment was developed collaboratively by computational experts from the Institute for Computational Engineering and Sciences (ICES) at UT-Austin, leading technologists from the M.D. Anderson Cancer Center in Houston, and cyberinfrastructure specialists and systems from TACC. Using precise lasers, state-of-the-art thermal imaging technology, and advanced computational methods, dynamic, data-driven treatments are being pursued as a minimally invasive alternative to the standard treatment of cancer.} |
| author | = | "Yusheng Feng and David Fuentes and Andrea Hawkins and Jon Bass and Marissa Nichole Rylander and Andrew Elliott and Anil Shetty and R. Jason Stafford and J. Tinsley Oden", | |
| title | = | "Nanoshell-Mediated Laser Surgery Simulation for Prostate Cancer Treatment", | |
| journal | = | "Engineering with Computers", | |
| note | = | "Special issue on Computational Bioengineering", | |
| year | = | "2008", | |
| url | = | "http://www.tacc.utexas.edu/research/users/features/laser_surgery.pdf" |
| Author | = | "K. R. Diller and J. T. Oden and C. Bajaj and J. C. Browne and J. Hazle and I. Babu����ska and J. Bass and L. Bidaut and L. Demkowicz and A. Elliott and Y. Feng and D. Fuentes and S. Goswami and A. Hawkins and S. Khoshnevis and B. Kwon and S. Prudhomme and R. J. Stafford", | |
| TITLE | = | "Computational Infrastructure for the Real-Time Patient-Specific Treatment of Cancer", | |
| year | = | 2008, | |
| INSTITUTION | = | "University of Texas at Austin", | |
| URL | = | "http://www.tacc.utexas.edu/research/users/features/cancer.pdf" |
| author | = | "A.A. Oberai and N.H. Gokhale and M.M. Doyley and J.C.Bamber", | |
| title | = | "Evaluation of the Adjoint Equation Based Algorithm for Elasticity Imaging", | |
| journal | = | "Physics in Medicine and Biology", | |
| year | = | "2004", | |
| volume | = | "49", | |
| pages | = | "2955--2947" |
| AUTHOR | = | "A. Majumdar and A. Birnbaum and D. Choi and A. Trivedi and S. K. Warfield and K. Baldridge and P. Krysl", | |
| TITLE | = | "A Dynamic Data Driven Grid System for Intra-Operative Image Guided Neurosurgery", | |
| BOOKTITLE | = | "ICCS 2005", | |
| PAGES | = | "672--679", | |
| editor | = | "V.S. Sunderam et al.", | |
| YEAR | = | "2005" |
| AUTHOR | = | {Sermesant, M. and Clatz, O. and Li, Z. and Lanteri, S. and Delingette, H. and Ayache, H.}, | |
| TITLE | = | {A parallel implementation of non-rigid registration using a volumetric biomechanical model}, | |
| BOOKTITLE | = | {Second International Workshop on Biomedical Image Registration {WBIR'03}}, | |
| ADDRESS | = | {Philadelphia, PA, USA}, | |
| PUBLISHER | = | {Springer-Verlag}, | |
| EDITOR | = | {Gee, J.C. and Maintz, J.B.A. and Vannier, M.W.}, | |
| SERIES | = | {Lecture Notes in Computer Science}, | |
| VOLUME | = | {2717}, | |
| PAGES | = | {398-407}, | |
| DATE | = | {june 23-24}, | |
| YEAR | = | {2003}, | |
| url | = | {ftp://ftp-sop.inria.fr/epidaure/Publications/Sermesant/WBIR2003Sermesant.pdf} |
| AUTHOR | = | {J. Rexilius and S.K. Warfield and C.R.G. Guttmann and X. Wei and R. Benson and L. Wolfson and M. Shenton and H. Handels and R. Kikinis}, | |
| TITLE | = | {A Novel Nonrigid Registration Algorithm And Applications}, | |
| BOOKTITLE | = | {Medical Image Computing and Computer-Assisted Intervention - MICCAI 2001}, | |
| ADDRESS | = | {Philadelphia, PA, USA}, | |
| PUBLISHER | = | {Springer-Verlag}, | |
| EDITOR | = | {Gee, J.C. and Maintz, J.B.A. and Vannier, M.W.}, | |
| SERIES | = | {Lecture Notes in Computer Science}, | |
| VOLUME | = | {2208}, | |
| PAGES | = | {923}, | |
| YEAR | = | {2003}, | |
| url | = | {http://www.springerlink.com/app/home/contribution.asp?wasp=6pgwnvthup0amt7g9j4k&referrer=parent&backto=issue,105,251;journal,1191,1949;linkingpublicationresults,1:105633,1} |
| author | = | "Simon K. Warfield and Steven J. Haker and Ion-Florin Talos and Corey A. Kemper and Neil Weisenfeld and Andrea U.J. Mewes and Daniel Goldberg-Zimring and Kelly H. Zou and Carl-Fredrik Westin and William M. Wells and Clare M.C. Tempany and Alexandra Golby and Peter M. Black and Ferenc A. Jolesz and Ron Kikinis", | |
| title | = | "Capturing intraoperative deformations: research experience at Brigham and Women's hospital", | |
| journal | = | "Medical Image Analysis", | |
| url | = | "http://splweb.bwh.harvard.edu:8000/pages/papers/warfield/capturing-intraoperative-deformations-MIA2005.pdf", | |
| year | = | "2005" |
| author | = | "Simon K. Warfield and Florin Talos and Alida Tei and Arya Nabavi and Matthieu Ferrant and Peter McL. Black and Ferenc A. Jolesz and Ron Kikinis", | |
| title | = | "Real-Time Registration of Volumetic Brain {MRI} by Biomechanical Simulation of Deformation during Image Guided Neurosurgery", | |
| journal | = | "Computing and Visualization in Science", | |
| url | = | "http://splweb.bwh.harvard.edu:8000/pages/ppl/warfield/papers/2002/warfield-2002-cvs-appeared.pdf", | |
| year | = | "2002" |
| author | = | "Matthieu Ferrant and Arya Nabavi and Benoit Macq and Ferenc A. Jolesz and Ron Kikinis and Simon K. Warfield", | |
| title | = | "Registration of {3D} Intraoperative {MR} Images of the Brain using a Finite Element Biomechanical Model", | |
| journal | = | "IEEE Transactions on Medical Imaging", | |
| url | = | "http://splweb.bwh.harvard.edu:8000/pages/papers/ferrant/tmi2001.pdf", | |
| year | = | "2001" |
| author | = | "Simon K. Warfield and Matthieu Ferrant and Xavier Gallez and Arya Nabavi and Ferenc A. Jolesz and Ron Kikinis", | |
| title | = | "Real-Time Biomechanical Simulation of Volumetric Brain Deformation for Image Guided Neurosurgery", | |
| booktitle | = | "Proceedings of SC2000", | |
| url | = | "http://www.sc2000.org/techpapr/papers/pap.pap230.pdf", | |
| year | = | 2000 |
| author | = | "V. Kolehmainen and A. Vanne and S. Siltanen and S. Jarvenpaa and J.P. Kaipio and M. Lassas and M. Kalke", | |
| title | = | "Parallelized Bayesian inversion for three-dimensional dental X-ray imaging", | |
| journal | = | "IEEE Transactions on Medical Imaging", | |
| volume | = | "25", | |
| number | = | "2", | |
| month | = | "February", | |
| year | = | "2006", | |
| pages | = | "218--228" |
| author | = | "F. Ogando and A. Signell and J.A. Heikkinen and M. Aspn��s and S. Henriksson and S.J. Janhunen and T.P. Kiviniemi", | |
| title | = | "Performance enhancements to ELMFIRE gyrokinetic code leading to new ranges of application", | |
| booktitle | = | "33rd EPS Conference on Plasma Phys.", | |
| year | = | "2006", | |
| url | = | "http://epsppd.epfl.ch/Roma/pdf/P4_153.pdf", | |
| note | = | "European fusion code" |
| author | = | "P. Zhu and A. Bhattacharjee and K. Germaschewski", | |
| title | = | "Intermediate nonlinear evolution of the Parker instability: Formation of convection-induced discontinuities and absence of finite-time singularities", | |
| journal | = | "Phys. Rev. Lett.", | |
| volume | = | "96", | |
| number | = | "065001", | |
| year | = | "2006", | |
| note | = | "doi:10.1103/PhysRevLett.96.065001" |
| author | = | "B. Philip and M. Pernice and L.Chacon", | |
| title | = | "Solution of Reduced Resistive Magnetohydrodynamics using Implicit Adaptive Mesh Refinement", | |
| booktitle | = | "Proceedings of the 16th International Conference on Domain Decomposition methods", | |
| year | = | "2005", | |
| Lab | = | {LANL} |
| author | = | "M. Pernice and B. Philip", | |
| title | = | "Solution of Equilibrium Radiation Diffusion Problems using Adaptive Mesh Refinement", | |
| year | = | "2005", | |
| journal | = | "SIAM J. of Sci. Comput.", | |
| Lab | = | {LANL} |
| author | = | "A. H. Glasser and X. Z. Tang", | |
| title | = | "The SEL macroscopic modeling code", | |
| year | = | "2004", | |
| journal | = | "Computer Physics Communications", | |
| pages | = | "237--243", | |
| volume | = | "164", | |
| Lab | = | {LANL} |
| author | = | "Y. Nishimura and Z.Lin", | |
| title | = | "A finite element mesh in a tokamak edge geometry", | |
| year | = | "2006", | |
| journal | = | "Contributions to Plasma Physics", | |
| volume | = | 22, | |
| Lab | = | {PPPL} |
| author | = | "Y. Nishimura and Z.Lin and J.Lewandowski and S.Ethier", | |
| title | = | "A finite element Poisson solver for gyrokinetic particle simulations in a global field aligned mesh", | |
| year | = | "2006", | |
| journal | = | "J. Comput. Phys.", | |
| volume | = | 214, | |
| pages | = | "657", | |
| Lab | = | {PPPL} |
| author | = | "J.L.V Lewandowski and Y.Nishimura and W.W.Lee and Z.Lin and S. Ethier", | |
| title | = | "Global gyrokinetic Particle-in-cell Simulations with Trapped Electrons", | |
| booktitle | = | "Sherwood Fusion Theory Conference, Missoula, MT", | |
| year | = | "2004", | |
| url | = | "http://www.sherwoodtheory.org/sherwood04/program/1e15.pdf", | |
| Lab | = | {PPPL} |
| author | = | "Y. Nishimura and Z.Lin and L.Chen and J.Lewandowski and S.Ethier and W. Wang", | |
| title | = | "Electromagnetic gyrokinetic simulation with a fluid-kinetic hybrid electron model", | |
| booktitle | = | "Sherwood Fusion Theory Conference, Missoula, MT", | |
| year | = | "2004", | |
| url | = | "http://www.sherwoodtheory.org/sherwood04/program/1C32.pdf", | |
| Lab | = | {PPPL} |
| author | = | "X.~Z.~Tang and A.~H.~Boozer", | |
| title | = | "Numerical studies of a steady state axisymmetric co-axial helicity injection plasma", | |
| journal | = | "Physics of Plasmas", | |
| year | = | "2004", | |
| pages | = | "171--185", | |
| volume | = | "11", | |
| Lab | = | {LANL} |
| title | = | {Inclusion of electromagnetic effects into gyrokinetic particle simulations}, | |
| author | = | {Y. Nishimura and Z.Lin and L.Chen and W. Wang}, | |
| note | = | {American Physical Society 45th Annual Meeting Division of Plasma Physics, Albuquerque, New Mexico, October 2003}, | |
| year | = | "2003" |
| Author | = | "X. Z. Tang and G. Y. Fu and S. C. Jardin and L. L. Lowe and W. Park and H. R. Strauss", | |
| TITLE | = | "Resistive Magnetohydrodynamics Simulation of Fusion Plasmas", | |
| year | = | 2001, | |
| INSTITUTION | = | "Princeton Plasma Physics Laboratory", | |
| number | = | "PPPL-3532", | |
| URL | = | "http://www.pppl.gov/pub_report/2001/PPPL-3532.pdf", | |
| note | = | "Presented at 10th Society for Industrial and Applied Mathematics (SIAM) Conference on Parallel Processing for Scientific Computing, Portsmouth, Virginia, March 12-14, 2001.", | |
| Lab | = | {PPPL} |
| title | = | "Preconditioned iterative methods for Stokes flow problems arising in computational geodynamics", | |
| journal | = | "Physics of the Earth and Planetary Interiors", | |
| volume | = | "171", | |
| number | = | "1-4", | |
| pages | = | "33 - 47", | |
| year | = | "2008", | |
| note | = | "Recent Advances in Computational Geodynamics: Theory, Numerics and Applications", | |
| issn | = | "0031-9201", | |
| doi | = | "DOI: 10.1016/j.pepi.2008.07.036", | |
| url | = | "http://www.sciencedirect.com/science/article/B6V6S-4T5JHY6-2/2/2d30f943c948d97fb5797a1f89b73698", | |
| author | = | "Dave A. May and Louis Moresi", | |
| keywords | = | "Stokes flow", | |
| keywords | = | "Krylov", | |
| keywords | = | "Preconditioner", | |
| keywords | = | "Schur complement", | |
| keywords | = | "BFBt" |
| author | = | {R.F. Katz and M.G. Worster}, | |
| title | = | {Simulation of directional solidification, thermochemical convection, and chimney formation in a {H}ele-{S}haw cell}, | |
| journal | = | {J. Comp. Phys.}, | |
| volume | = | {227}, | |
| pages | = | {9823-9840}, | |
| year | = | {2008}, | |
| doi | = | {10.1016/j.jcp.2008.06.039} |
| author | = | {A. Askan and V. Akcelik and J. Bielak and O. Ghattas}, | |
| title | = | {Full waveform inversion for seismic velocity and anelastic losses in heterogeneous structures}, | |
| journal | = | {Bulletin of Seismological Society of America}, | |
| year | = | {2007}, | |
| volume | = | {97}, | |
| pages | = | {1990--2008} |
| author | = | {Richard F. Katz and Marc Spiegelman and Benjamin Holtzman}, | |
| title | = | {The dynamics of melt and shear localization in partially molten aggregates}, | |
| journal | = | {Nature}, | |
| year | = | {2006}, | |
| volume | = | {442}, | |
| pages | = | {676--679}, | |
| month | = | {August}, | |
| day | = | {10}, | |
| url | = | {http://www.nature.com/nature/journal/v442/n7103/abs/nature05039.html} |
| author | = | "Roland Masson and Philippe Quandalle and Stephane Requena and Robert Scheichl", | |
| year | = | "2003", | |
| title | = | "Parallel Preconditioning for Sedimentary Basin Simulations", | |
| booktitle | = | "Large-Scale Scientific Computing: 4th International Conference, LSSC 2003, Sozopol, Bulgaria, June 4-8, 2003" |
| author | = | "Chuan Lu and Peter C. Lichtner", | |
| year | = | "2005", | |
| title | = | "{PFLOTRAN}: Massively Parallel {3-D} Simulator for {CO2} Sequestration in Geologic Media", | |
| booktitle | = | "Fourth Annual Conference on Carbon Capture and Sequestration DOE/NETL", | |
| Lab | = | {LANL} |
| author | = | {R. Scheichl and R. Masson and J. Wendebourg}, | |
| title | = | {Decoupling and Block Preconditioning for Sedimentary Basin Simulations}, | |
| journal | = | {Computational Geosciences}, | |
| year | = | {2003}, | |
| volume | = | {7}, | |
| pages | = | {295--318}, | |
| url | = | {http://www.maths.bath.ac.uk/MATHEMATICS/preprints.html} |
| author | = | {C. E. Kees and C.T. Miller and E.W. Jenkins and C.T. Kelley}, | |
| title | = | {Versatile multilevel Schwarz preconditioners for multiphase flow}, | |
| journal | = | {Computational Geosciences}, | |
| year | = | {2003}, | |
| volume | = | {7}, | |
| pages | = | {91--114} |
| author | = | {JN Buur and T Kuehnel}, | |
| title | = | {Improving depth imaging by automated model updating}, | |
| journal | = | {The Leading Edge}, | |
| year | = | {2003}, | |
| volume | = | {22}, | |
| pages | = | {310-318} |
| author | = | "B. Appelbe and D. May and S. Quenette and S. Tang and F. Wang and L. Moresi", | |
| year | = | "2003", | |
| title | = | "Mantle convection modeling with viscoelastic/brittle lithosphere: Numerical and computational methodology", | |
| page | = | "781", | |
| booktitle | = | "Lecture Notes in Computer Science, volume 2659, part of the ICCS Conference Proceedings", | |
| publisher | = | "Springer-Verlag", | |
| URL | = | "http://vpac.org/VDT/SNARK/Presentations/RD0201-paper-20030602-ICCS03_ACES03_LNCS-mantle_convection_modelling.pdf" |
| Author | = | "Guillaume Dumont and Michel Kern", | |
| TITLE | = | "Parallelization of a 3D Seismic Migration Code with PETSc", | |
| year | = | 1999, | |
| booktitle | = | "Proceedings of the Ninth SIAM Conference on Parallel Processing for Scientific Computing" |
| author | = | {R.F. Katz}, | |
| title | = | {The deep roots of volcanoes: models of magma dynamics with applications to subduction zones}, | |
| school | = | {Columbia University}, | |
| year | = | {2005}, | |
| url | = | {http://www.ldeo.columbia.edu/\~{ }katz/thesis/Katz_Dissertation_Columbia05.pdf} |
| author | = | {Matthew~G. Knepley and Richard~F. Katz and Barry~F. Smith}, | |
| editor | = | {A.~M. Bruaset and P. Bjorstad and A. Tveito}, | |
| title | = | {Numerical Solution of Partial Differential Equations}, | |
| chapter | = | {Developing a Geodynamics Simulation with PETSc}, | |
| publisher | = | {Springer-Verlag}, | |
| year | = | {2004} |
| author | = | {Richard F. Katz and Marc Spiegelman and S.M. Carbotte}, | |
| title | = | {Ridge migration, asthenospheric flow and the origin of magmatic segmentation in the global mid-ocean ridge system}, | |
| journal | = | {Geophys.\ Res.\ Letts.}, | |
| year | = | {2004}, | |
| volume | = | {31}, | |
| pages | = | {L15605}, |
| author | = | {Richard F. Katz and Matthew G. Knepley and Barry Smith and Marc Spiegelman and Ethan Coon}, | |
| title | = | {Numerical simulation of geodynamic processes with the Portable Extensible Toolkit for Scientific Computation}, | |
| journal | = | {Phys. Earth Planet. In.}, | |
| year | = | {2007} |
| author | = | {R. Govers and M.J.R. Wortel}, | |
| title | = | {Lithosphere tearing at STEP faults: response to edges of subduction zones}, | |
| journal | = | {Earth and Planetary Science Letters}, | |
| volume | = | {236/1-2}, | |
| pages | = | {505-523}, | |
| year | = | {2005}, |
| author | = | "B. Appelbe and D. May and S. Quenette and S. Tang and F. Wang and L. Moresi", | |
| year | = | "2002", | |
| title | = | "Towards Rapid Geoscience Model Development - The {Snark} Project", | |
| booktitle | = | "Proceedings of 3rd ACES (APEC Cooperation for Earthquake Simulation) Workshop" |
| author | = | "Bill Appelbe and David May and Louis Moresi and Steve Quenette and Siew-Chiang Tan and Feng Wang", | |
| title | = | "Snark - A Reusable Framwork for Geoscience Computational Models", | |
| journal | = | "Submitted to Pure and Applied Geosciences" |
| author | = | "Volkan Akcelik and Jacobo Bielak and George Biros and Ioannis Epanomeritakis and Antonio Fernandez Omar Ghattas and Eui Joong Kim and David O'Hallaron and Tiankai Tu", | |
| year | = | "2003", | |
| title | = | "High Resolution Forward and Inverse Earthquake Modeling on Terascale Computers", | |
| booktitle | = | "Proceedings of SC2003", | |
| note | = | "A winner of the Gordon Bell Prize for special achievement at SC2003" |
| author | = | "Khatiwala, S.", | |
| title | = | "A computational framework for simulation of biogeochemical tracers in the ocean", | |
| journal | = | "Glob. Biogeochem. Cycles", | |
| volume | = | "21", | |
| doi | = | "doi:10.1029/2007GB002923", | |
| year | = | 2007, | |
| url | = | " http://www.ldeo.columbia.edu/\~{ }spk/Papers/KhatiwalaMatrixBiogeochemGBC07.pdf" |
| author | = | "Sergey Danilov, Gennady Kivman and Jens Schroeter", | |
| journal | = | "Ocean Modelling", | |
| year | = | "2004", | |
| volume | = | "6(2)", | |
| pages | = | "125-150", | |
| title | = | "A finite-element Ocean Model: Principles and Evaluation", | |
| url | = | "http://www.sciencedirect.com/science?_ob=IssueURL&_tockey=%23TOC%236214%232004%23999939997%231%23FLA%23Volume_6,_Issue_2,_Pages_101-190_(2004)&_auth=y&view=c&_acct=C000007278&_version=1&_urlVersion=0&_userid=97338&md5=c3a50a31c599d8d38c8ce1f29117f267" |
| author | = | {S. Danilov and G. Kivman and J. Schroter}, | |
| year | = | 2004, | |
| title | = | {Evaluation of an eddy-permitting finite-element ocean model in the North Atlantic}, | |
| journal | = | {Ocean Modelling} |
| author | = | {L. Nerger and S. Danilov and G. Kivman and W. Hiller and J. Schroter}, | |
| year | = | 2004, | |
| title | = | {Data Assimilation with the Ensemble Kalman Filter and the SEIK Filter applied to a Finite Element Model of the North Atlantic}, | |
| journal | = | {Journal of marine systems}, |
| author | = | {M. Lauter}, | |
| year | = | 2004, | |
| title | = | {GrossrAumige Zirkulationsstrukturen in einem nichtlinearen adaptiven AtmosphArenmodell}, | |
| journal | = | {Berichte zur Polar- und Meeresforschung}, |
| author | = | {M. Lauter and D. Handorf and K. Dethloff}, | |
| year | = | 2004, | |
| title | = | {Unsteady analytical solutions of the spherical shallow water equations}, | |
| journal | = | {Journal of computational physics} |
| author | = | {M. Lauter}, | |
| year | = | 2004, | |
| title | = | {GrossAumige Zirkulationsstrukturen in einem nichtlinearen adaptiven AtmosphArenmodell}, | |
| institution | = | {UniversitAt Potsdam, 134 P., UniversitAt Potsdam} |
| author | = | {S. Frickenhaus and W. Hiller and M. Best}, | |
| year | = | 2005, | |
| title | = | {FoSSI : The Family of Simplified Solver Interfaces for the rapid development of parallel numerical atmosphere and ocean models}, | |
| journal | = | {Ocean Modelling}, | |
| volume | = | {10}, | |
| pages | = | {185--191} |
| author | = | {I Epanomeritakis and V Ak\c{c}elik and O Ghattas and J Bielak}, | |
| title | = | {A Newton-CG method for large-scale three-dimensional elasticfull-waveform seismic inversion}, | |
| journal | = | {Inverse Problems}, | |
| volume | = | {24}, | |
| number | = | {3}, | |
| pages | = | {034015 (26pp)}, | |
| url | = | {http://stacks.iop.org/0266-5611/24/034015}, | |
| year | = | {2008}, | |
| abstract | = | {We present a nonlinear optimization method for large-scale3D elastic full-waveform seismic inversion. The method combines outer Gauss-Newton nonlinear iterations with inner conjugate gradient linear iterations, globalized by an Armijo backtracking line search, solved on a sequence of finer grids and higher frequencies to remain in the vicinity of the global optimum, inexactly terminated to prevent oversolving, preconditioned by L-BFGS/Frankel, regularized by a total variation operator to capture sharp interfaces, finely discretized by finite elements in the Lam\'{e} parameter space to provide flexibility and avoid bias, implemented in matrix-free fashion with adjoint-based computation of reduced gradient and reduced Hessian-vector products, checkpointed to avoid full spacetime waveform storage, and partitioned spatially across processors to parallelize the solutions of the forward and adjoint wave equations and the evaluation of gradient-like information. Several numerical examples demonstrate the grid independence of linear and nonlinear iterations, the effectiveness of the preconditioner, the ability to solve inverse problems with up to 17 million inversion parameters on up to 2048 processors, the effectiveness of multiscale continuation in keeping iterates in the basin of attraction of the global minimum, and the ability to fit the observational data while reconstructing the model with reasonable resolution and capturing sharp interfaces.} |
| title | = | "STOMP (Subsurface Transport Over Multiple Phases) webpage", | |
| url | = | "http://stomp.pnl.gov/" |
| AUTHOR | = | "L. Hluchy and V.D. Tran and D.Froehlich and W.Castaings", | |
| TITLE | = | "Methods and Experiences For Parallelizing Flood Models", | |
| YEAR | = | "2003", | |
| BOOKTITLE | = | "Recent Advances in Parallel Virtual Machine and Message Passing Interface: 10th European PVM/MPI User's Group Meeting", | |
| NOTE | = | "Springer Lecture Notes in Computer Science, Volume 2840", | |
| URL | = | "http://www.springerlink.com/app/home/contribution.asp?wasp=2e9afcba8f614cd9a6f94a5294d1cbb0&referrer=parent&backto=issue,93,95;journal,588,1972;linkingpublicationresults,1:105633,1" |
| AUTHOR | = | "L. Hluchy and V.D. Tran and J. Astalos and M. Dobrucky and G. T. Nguyen and D.Froehlich", | |
| TITLE | = | "Flood Modeling System and Its Parallelization", | |
| YEAR | = | "2002", | |
| BOOKTITLE | = | "Proceedings of the International Conference on Parallel Computing in Electrical Engineering", | |
| URL | = | "http://portal.acm.org/citation.cfm?id=824476.825951" |
| AUTHOR | = | "J. P. Gwo and G. T. Yeh", | |
| TITLE | = | "High-Performance Simulation of Surface-Subsurface Coupled Flow and Reactive Transport at Watershed Scale", | |
| YEAR | = | "2004", | |
| BOOKTITLE | = | "The International Conference on Computational Methods", | |
| URL | = | "http://www.sfwmd.gov/org/era/uncertainty_wkshp/GwoYeh.pdf" |
| title | = | "The South Florida Regional Simulation Model and Hydrologic Simulation Engine", | |
| url | = | "http://www.sfwmd.gov/org/pld/hsm/cerp_pres/hse_num.pdf", | |
| note | = | "Simulates overland, groundwater and canal flows for south Florida. Uses PETSc for its linear solves" |
| AUTHOR | = | {Volkan Ak{\c c}elik and George Biros and Andrei Dr{\u{a}}g{\u{a}}nescu and Omar Ghattas and Judith~C. Hill and Gart~G. van Bloemen Waanders}, | |
| TITLE | = | {Dynamic data driven inversion for terascale simulations: real-time indentification of airborne contaminants}, | |
| BOOKTITLE | = | {Proceedings of SC2005}, | |
| ORGANIZATION | = | {IEEE/ACM}, | |
| ADDRESS | = | {Seattle, WA}, | |
| YEAR | = | {2005}, | |
| MONTH | = | {November}, | |
| url | = | "http://www.cs.cmu.edu/\~{ }oghattas/papers/sc05-inverse.pdf", | |
| Lab | = | "SNL" |
| Author | = | {Anton Antonov and Krassimir Georgiev and Emilia Komsalova and Zahari Zlatev}, | |
| TITLE | = | "Comparison of Two Local Refinement Methods for Large Scale Air Pollution Simulations", | |
| booktitle | = | "Large-Scale Scientific Computing: 4th International Conference, LSSC 2003", | |
| volume | = | "2907", | |
| year | = | 2003, | |
| publisher | = | "Springer-Verlag", | |
| url | = | "http://www.springerlink.com/app/home/contribution.asp?wasp=65dfaebc36f6453d9120b8f9f86fecc5&referrer=parent&backto=issue,32,55;journal,618,2072;linkingpublicationresults,1:105633,1" |
| AUTHOR | = | "Anton Antonov", | |
| TITLE | = | "Object-Oriented Framework for Large Scale Air Pollution Modeling", | |
| YEAR | = | "2001", | |
| BOOKTITLE | = | "Large-Scale Scientific Computing : Third International Conference, LSSC 2001, Sozopol, Bulgaria", | |
| NOTE | = | "Springer Lecture Notes in Computer Science, Volume 2179", | |
| URL | = | "http://www.springerlink.com/app/home/contribution.asp?wasp=3699c48fdb764bc7a3aa0539c7bf9f1d&referrer=parent&backto=issue,25,52;journal,1243,1972;linkingpublicationresults,1:105633,1" |
| author | = | {William E. Glassley and Ardyth M. Simmons and James R. Kercher}, | |
| year | = | 2000, | |
| title | = | {Mineralogical heterogeneity in fractured, porous media and its representation in reactive transport models}, | |
| journal | = | {Applied Geochemistry}, | |
| volume | = | {17}, | |
| pages | = | {699--708}, | |
| Lab | = | {LLNL} |
| author | = | {William E. Glassley and John J. Nitao and Charles W. Grant and James W. Johnson and Carl I. Steefel and James R. Kercher}, | |
| year | = | 2003, | |
| title | = | {The impact of climate change on vadose zone pore waters and its implication for long-term monitoring}, | |
| journal | = | {Computers and Geosciences}, | |
| volume | = | {29}, | |
| pages | = | {399-411}, | |
| Lab | = | {LLNL} |
| author | = | {Carl I. Steefel and Donald J. DePaolo and Peter C. Lichtner}, | |
| year | = | 2005, | |
| title | = | {Reactive transport modeling: An essential tool and a new research approach for the Earth sciences}, | |
| journal | = | {Earth and Planetary Science Letters}, | |
| Lab | = | {LLNL,LANL} |
| title | = | {Numerical Modeling of NAPL Source Zone Treatment}, | |
| author | = | {Hammond, G.E., A.J. Valocchi and P.C. Lichtner}, | |
| note | = | {Poster at American Geophysical Union Fall 2002 Meeting, San Francisco, CA.}, | |
| url | = | {http://cee.uiuc.edu/transport/hammond/agu_2002.pdf}, | |
| year | = | "2002", | |
| Lab | = | {LANL} |
| author | = | {Glenn E. Hammond}, | |
| title | = | "Innovative Methods for Solving Multicomponent Biogeochemical Groundwater Transport on Supercomputers", | |
| school | = | {University of Illinois at Urbana-Champaign}, | |
| year | = | 2003, | |
| url | = | {http://cee.uiuc.edu/transport/hammond/dissertation.pdf} |
| title | = | "Parallel Least-Squares Finite Element Method for Large Eddy Simulation of Large Scale Environmental Flows and Transport Processes", | |
| url | = | "http://es.epa.gov/ncer/progress/grants/96/high/tsang99.html", | |
| note | = | "EPA funded work to simulate turbulent dispersion of toxic chemicals around buildings and in Green Bay. Used PETSc for its linear solvers", | |
| year | = | 1999 |
| Author | = | "Glenn E. Hammond and Albert J. Valocchi and Peter C. Lichtner", | |
| TITLE | = | "Modeling Multicomponent Reactive Transport on Parallel Computers Using {J}acobian-Free {N}ewton {K}rylov with Operator-Split Preconditioners", | |
| year | = | 2002, | |
| URL | = | "http://www.cee.uiuc.edu/transport/publications/hammond/CMWR_2002.pdf", | |
| booktitle | = | "Proceedings of the XIV International Conference on Computational Methods in Water Resources, Delft, The Netherlands.", | |
| Lab | = | {LANL} |
| Author | = | "C. I. Steefel", | |
| TITLE | = | "Software for modeling multicomponent, multidimensional reactive transport", | |
| year | = | 2001, | |
| INSTITUTION | = | "Lawrence Livermore National Laboratory", | |
| number | = | "UCRL-MA-143182", | |
| Lab | = | {LLNL} |
| author | = | {C. I. Steefel and A. C. Lasaga}, | |
| title | = | "A coupled model for transport of multiple chemical-species and kinetic precipitation dissolution reactions with application to reactive flow in single-phase hydrothermal systems", | |
| journal | = | {Americal Journal of Science}, | |
| year | = | 1994, | |
| pages | = | {529-592}, | |
| volume | = | 294, | |
| number | = | 5 |
| Author | = | "C. I. Steefel and S. B. Yabusaki", | |
| TITLE | = | "OS3D/GIMRT, Software for Multicomponent-Multidimensional reactive transport: User's manual and programmer's guide", | |
| year | = | 1996, | |
| INSTITUTION | = | "Pacific Northwest National Laboratory", | |
| number | = | "PNNL-11166", | |
| Lab | = | {PNNL} |
| author | = | {G. E. Hammond and A.J. Valocchi and P.C. Lichtner}, | |
| title | = | "Application of {J}acobian-free {N}ewton-{K}rylov with physics-based preconditioning to biogeochemical transport", | |
| journal | = | {Advances in Water Resources}, | |
| year | = | 2005, | |
| pages | = | {359--376}, | |
| volume | = | 28, | |
| url | = | { http://www.sciencedirect.com/science?_ob=IssueURL&_tockey=%23TOC%235953%232005%23999719995%23576651%23FLA%23Volume_28,_Issue_4,_Pages_315-427_(April_2005)&_auth=y&view=c&_acct=C000059129&_version=1&_urlVersion=0&_userid=2914253&md5=0d485527443c6192356cc508e1621002}, | |
| Lab | = | {LANL} |
| author | = | "J Wang and N Zabaras", | |
| journal | = | "Int. J. Heat and Mass Transfer", | |
| title | = | "A Markov random field model of contamination source identification in porous media flow", | |
| year | = | 2005 |
| author | = | "Jong G. Kim and Hyoung W. Park", | |
| chapter | = | "Advanced Simulation Technique for Modeling Multiphase Fluid Flow in Porous Media", | |
| url | = | "http://www.springerlink.com/app/home/contribution.asp?wasp=m5uc84pqrh1qrg8clyuh&referrer=parent&backto=issue,1,117;journal,206,1787;linkingpublicationresults,1:105633,1", | |
| title | = | "Lecture Notes in Computer Science", | |
| publisher | = | "Springer-Verlag", | |
| volume | = | 3044, | |
| year | = | 2004 |
| author | = | {{Kim}, J.~G. and {Kim}, J.}, | |
| title | = | {Parallel Implementation of Finite Element Groundwater Flow Model}, | |
| journal | = | {AGU Spring Meeting Abstracts}, | |
| year | = | 2001, | |
| pages | = | {32-+}, |
| author | = | {A. M. Wasantha Lal and Randy Van Zee and Mark Belnap}, | |
| title | = | "CASE STUDY: A MODEL TO SIMULATE REGIONAL FLOW IN SOUTH FLORIDA", | |
| journal | = | {Journal of Hydraulic Engineering}, | |
| year | = | 2005, | |
| volume | = | 131, | |
| number | = | 4, | |
| pages | = | {247--258} |
| author | = | {Prasada Rao}, | |
| title | = | "A parallel RMA2 model for simulating large-scale free surface flows", | |
| journal | = | {Environmental Modelling and Software}, | |
| year | = | 2005, | |
| pages | = | {47--53}, |
| AUTHOR | = | "Prasada Rao", | |
| TITLE | = | "An Efficient Scalable Finite Element Model for Simulating Large Scale Hydrodynamic Flows", | |
| YEAR | = | "2003", | |
| BOOKTITLE | = | "Proceedings of the American Society of Civil Engineers 16th Engineering Mechanics Conference", | |
| URL | = | "http://www.ce.washington.edu/em03/proceedings/papers/477.pdf" |
| AUTHOR | = | "Peter C. Lichtner and Andrew Wolfsberg", | |
| TITLE | = | "Modeling Thermal-Hydrological-Chemical ({THC}) Coupled Processes with Applications to Underground Nuclear Tests at the Nevada Test Site; A Grand Challenge Supercomputing Problem", | |
| YEAR | = | "2004", | |
| BOOKTITLE | = | "MPU Workshop: Conceptual Model Development for Subsurface Reactive Transport Modeling of Inorganic Contaminants, Radionuclides and Nutrients", | |
| note | = | "Also Los Alamos National Laboratory report: LA-UR-04-1826", | |
| Lab | = | {LANL} |
| author | = | {Jason Abate and Peng Wang and Kamy Sepehrnoori}, | |
| title | = | {Parallel Compositional Reservior Simulation on Clusters of {PC}s}, | |
| journal | = | "Int. J. High Performance Computing Applications", | |
| year | = | 2001, | |
| volume | = | 15, | |
| number | = | 1, | |
| pages | = | {13--21}, | |
| month | = | {Spring}, |
| author | = | {Thomas James Byer}, | |
| title | = | {Preconditioned Newton Methods for Simulation of Reservoirs with Surface Facilities}, | |
| school | = | {Stanford}, | |
| year | = | 2000 |
| author | = | {Peter J. Puchyr}, | |
| title | = | {Experience with Parallel Computing for Reservoir and Geomechanics Simulation on a Win32 Cluster}, | |
| booktitle | = | {Proceedings of the Canadian International Petroleum Conference}, | |
| note | = | {Paper number CIPC2006-207}, | |
| year | = | {2006} |
| author | = | {P. Wang and S. Balay and K. Seperhrnoori and J. Wheeler and J. Abate and B. Smith and G. A. Pope}, | |
| title | = | {A Fully Implicit Parallel {EOS} Compositional Simulator for Large Scale Reservoir Simulation}, | |
| booktitle | = | {Proceedings of the 1999 Society of Petroleum Engineers 15th Reservoir Simulation Symposium}, | |
| note | = | "also available as Argonne preprint ANL/MCS-P743-1298", | |
| url | = | "ftp://info.mcs.anl.gov/pub/tech_reports/reports/P743.pdf", | |
| year | = | {1998} |
| Author | = | {B. J. Ara\'ujo and J. C. F. Teixeira and A. M. Cunha and C. P. T. Groth}, | |
| TITLE | = | "Parallel three-dimensional simulation of the injection molding process", | |
| journal | = | "International Journal for Numerical Methods in Fluids", | |
| year | = | 2008, | |
| url | = | {http://www3.interscience.wiley.com/journal/119876958/abstract?CRETRY=1&SRETRY=0} |
| author | = | {A. Cubero}, | |
| title | = | {a parallel coupled algorithm for collocated grids and its application to Large Eddy Simulation of a turbulent wake}, | |
| school | = | {University of Zaragoza (Spain)}, | |
| year | = | 2008 |
| Author | = | {A. Cubero and N. Fueyo}, | |
| TITLE | = | "A Compact Momentum Interpolation Method for unsteady flows and relaxation", | |
| journal | = | "Numerical Heat Transfer, part B-Fundamentals", | |
| volume | = | 56, | |
| number | = | 6, | |
| pages | = | "507--529", | |
| year | = | 2007, | |
| url | = | {http://www.informaworld.com/smpp |