Please note: these are rough notes about how a successful install went, not polished release documentation!
hdiutil attach code-2004-1201.iso
cd /Volumes/SeedCode/
env HOME=/Volumes/seed/fig/FIGdisk.Nov20 FIGCONFIG_DBNAME=fig_nov20 \
FIGCONFIG_DBPORT=13111 ./install-seed \
/Volumes/seed/fig/FIGdisk.Nov20 mac
source /Volumes/seed/fig/FIGdisk.Nov20/config/fig-user-env.sh
You'll need to obtain a SEED data release to put into the FIGdisk/FIG/Data directory.
Check out a CVS release of the SEED:
mkdir dist/releases
mkdir dev
cd dev
cvs -d :ext:username@biocvs.mcs.anl.gov:/disks/cvs/bio co seed_base
cp ReleaseTools/Makefile.top Makefile
Switch to it:
switch_to_release dev
Currently, there are some install problems with the environment. The
current fix is the following:
mkdir -p /opt/bcr
cd /opt/bcr
ln -s <figdisk>/env 2004-1101
Preparing the configuration
---------------------------
FIGdisk/config/FIG_Config.pm must be edited to include the name of the
database instance used for sprout:
$sproutDB = "Sprout";
$sproutData = "$fig/SproutData";
Check out the Sprout code:
cvs -d :ext:username@biocvs.mcs.anl.gov:/disks/cvs/bio co Sprout
and build:
make
Preparing the data
------------------
The sprout data tables are placed in the directory
FIGdisk/FIG/SproutData.
At this point, the data can be loaded:
source FIGdisk/config/fig-user-env.sh
load_sprout
Setting up the NMPDR interfaces
-------------------------------
Check out the GBrowse and Nmpdr code:
cvs -d :ext:username@biocvs.mcs.anl.gov:/disks/cvs/bio co GBrowse NmpdrConfigs
and build:
make
Browse to the NMPDR toplevel page:
http://machinename/FIG/Html/www.nmpdr.org/index.html
